PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448458.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24828.4 Da    PI: 9.5246
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448458.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.81.6e-191663249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ien+ nrqvtfskRrng++KKA+EL  +++aev +i+ s+  k y +
  XP_016448458.1 16 KIENQNNRQVTFSKRRNGVFKKANELAAMTGAEVGIIVSSPGSKPYSF 63
                    79*************************************998776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.343767IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-24766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-22877IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-15929IPR002100Transcription factor, MADS-box
PfamPF003193.2E-221663IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSTRLIKGRK SVCLAKIENQ NNRQVTFSKR RNGVFKKANE LAAMTGAEVG IIVSSPGSKP  60
YSFGHPNINE IMNKYVGEER PLSPSSPDID EKYVQTFRKA NSRKLNAQLN TLQDQLDFEL  120
SLKNKLNQMN KNVESQQEWF RGPIEKMNYT KASILKEELE DLLLKVKKYG PYGDFGFGRI  180
HGIEVGVFLR NCEDAGRICK GGNFAFAIFC HIYDFCGSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448458.11e-163PREDICTED: agamous-like MADS-box protein AGL29, partial
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3829435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-28AGAMOUS-like 62